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Qlucore Omics Explorer 3.8

Introduction

Qlucore Omics Explorer 3.8 focuses on improvements for single cell data analysis and includes a flexible and fast UMAP plot. The new features are: UMAP...

Getting started

Video Tutorial

Introduction to Qlucore Omics Explorer and some of the basic functionalities, including the user interface, how to perform statistical analysis, visualize...

Import normalized data

Video Tutorial

This tutorial shows how to import a normalized data matrix using the wizard. Tab separated txt, csv or tsv files are supported.

Data preprocessing 

Video Tutorial

This tutorial shows how to preprocess data prior to the analysis. The purpose of the preprocessing is to prepare a dataset for analysis and make it easer...

Import a raw count data matrix

Video Tutorial

This tutorial shows how to import a raw count data matrix using the wizard. The data is normalized and log transformed as part of the import process.

Import VST RLOG from Deseq2

Video Tutorial

This tutorial shows how to import a VST normalized data set from DESeq2 using the wizard, add annotations as well as a how to perform statistical analysis...

Import 10x Genomics single cell data

Video Tutorial

This tutorial shows how to import a 10X Genomics single cell data set. The 10X Genomic data import is performed using a predefined template in Qlucore...

Molecular Mechanism of T-cell Infiltration and Survival in Breast Cancer

Webinar

Tumor cells can be detected and eliminated by the immune system, mediated by cells such as natural killer cells, dendritic cells and CD4+ T-cells. To exert...

Qlucore Insights

Introduction

A product transforming clinical data into new insights to aid clinicians and lab personnel in their work with precision medicine. The program supports RNA...

KOL about using RNA-seq in clinical cancer diagnostics

Other

Interview with Thoas Fioretos, Professor in Clinical Genetics, Lund University in Sweden. In the interview questions about using RNA seq in clinical...

Using RNA-seq for diagnosis of acute lymphoblastic leukemia

Other

Short interview with Key Opinion Leader Thoas Fioretos, Professor in Clinical Genetics, Lund University, Sweden about the benefits using RNA seq for...

Benefits of using RNA-seq for clinical cancer diagnostics

Other

Short interview with Key Opinion Leader Thoas Fioretos, Professor in Clinical Genetics, Lund University, Sweden about major benefits of using RNA-seq in...

Import TCGA data

Video Tutorial

This tutorial shows how to import a data set from TCGA. The import is done using a template. Its possible to create your own templates and add them to the...

Import RNA-seq BAM files

Video Tutorial

This tutorial shows how to import RNA-seq BAM-files. The data is normalized and log transformed as part of the import process. The files need to be aligned...

Gain more insight combining Omics Explorer with MetaCore

Introduction

By performing statistical analysis in Qlucore Omics Explorer, you can quickly identify a list of genes, proteins etc with significant differences between...

Interactive Genome Browser in the NGS module

Introduction

The NGS module in Qlucore Omics Explorer enables exploration and analysis of sequencing data such as DNA-seq , RNA-seq and ChIP seq data. The module...

Identify pathways using GSEA in Qlucore Omics Explorer

Introduction

Gene set enrichment analysis is an excellent method to quickly identify sets of genes such as pathways and other lists of variables that are enriched in a...

Quick workflow to analyze TCGA data

Introduction

The cancer genome atlas, TCGA, is the world's largest collection of genomic data and can easily be imported into Qlucore Omics Explorer. Once imported you...

Principal Component Analysis and fast visualization

Introduction

Principal component analysis is a great method to reduce noise and quickly discover underlying patterns in a large data set. Qlucore Omics Explorer...

Qlucore Omics Explorer Demo

Introduction

With Qlucore Omics Explorer all analysis is instant. The program includes a range of powerful tools and statistical filters but is still very easy to use...

Short intro Qlucore Omics Explorer

Introduction

Qlucore Omics Explorer makes data analysis easier and faster - and improves the exploration and interpretation of complex multi omics data on both PC and...

Import and analyze public data from SRA, GEO and TCGA

Webinar

Many new studies include RNA sequencing data. In this webinar we will go through the process of downloading and importing SRA data using the SRA toolkit...

Statistics and Biomarker Workbench

Webinar

In this webinar we will present new statistical methods and options that have been added to the statistics dialogue. We will also show how the new...

Qlucore Diagnostics

Introduction

This video gives a short introduction to Qlucore Diagnostics, a unique software that provides a solution building on the requirements of the future...

Biomarker Workbench for set up of multiple statistical tests

Introduction

The Biomarker workbench in Qlucore Omics Explorer is optimized for drug development and biomarker discovery and it makes advanced set up of statistical...

Easy and fast ChIP-seq

Introduction

Performing peak analysis is quick and easy in Qlucore Omics Explorer. With the interactive Genome Browser, you add filters to the ChIP-seq data to quickly...

Analyze gene fusions in Gene Fusion Workbench

Introduction

The gene fusion analysis support in Qlucore Omics Explorer enables fast and easy analysis and visualization of detected gene fusions in a research setting...

Make new discoveries in your data using different plot types

Webinar

The webinar shows how you can interactively work with your data to make new discoveries using PCA plots with networks, heatmaps with hierarchical...

RNA-seq and Single cell data analysis

Webinar

In this webinar we will show examples on how to work with RNA-seq as well as Single cell data. We will use different public datasets from various sources...

Proteomics and Metabolomics data analysis

Webinar

The webinar shows examples on how to work with Proteomics as well as Metabolomics data. We will use different public datasets and visualize and...

Pathway analysis with Gene Set Enrichment Analysis (GSEA)

Webinar

How to use Gene Set Enrichment Analysis (GSEA) to analyze datasets using functional information such as pathways in Qlucore Omics Explorer. The GSEA...

User testimonial: Brigham and Women´s Hospital, USA

Webinar

Watch the video to learn what Dr. Kevin Wei, Instructor in Medicine at Brigham and Women´s Hospital, Boston, USA, say about using Qlucore Omics Explorer.

Value using Qlucore Omics Explorer

Introduction

Watch the video to learn more about the benefits of using Qlucore. Listen how MD, PhD, David Gisselsson Nord Research Group Leader, Principal Investigator...

Strategies to prioritize and filter our results

Webinar

Big data comes with big results, especially when you are in a discovery mode. How do you filter 10,000 findings for meaningful and actionable ones? We will...

How to identify and visualize correlated variables

Webinar

The webinar focus on how to work with variable correlation in Qlucore Omics Explorer and some features related to that. E.g. finding correlated variables...

Import RNA-seq data

Introduction

There are several ways to import RNA-seq data into Qlucore Omics Explorer. Watch this brief introduction on how to perform direct import of BAM files, and...

Introduction Box plots

Introduction

Learn how to use the box plot and some of the many configuration options it has in Qlucore Omics Explorer. It is easy and fast to set-up plots and to...

Create plots easily

Webinar

The webinar shows how you can interactively work with your data utilizing the wide range of plots available in Qlucore Omics Explorer, also introducing...

Easy access to different type of public data

Webinar

In this webinar we will show the inbuilt methods for easy access and download to public data In Qlucore Omics Explorer. The program offers several ways to...

Genomic Analysis

Webinar

In this webinar we demonstrate how to work with the NGS Project Manager in Qlucore Omics Explorer and the integrated Genome browser. We look at Variant...

Explore chronic liver disease data and find related datasets

Webinar

Qlucore Omics Explorer and Genevestigator are two complementary tools/services, which when used together provides the end user with increased value and...

How to set-up and configure different plots

Webinar

In this webinar we will go through how to set-up and configure plots. Single plots and synchronized plots will be presented. Details about preparing a plot...

Correlation, lists, 2D plots and coloring

Webinar

Learn how to use the correlation tool in Qlucore Omics Explorer, how to generate lists in different ways and how to compare lists in Venn Diagrams. Qlucore...

Introduction to Qlucore Omics Explorer

Webinar

Quick and easy to use bioinformatics analysis software. Learn how to easy analyze and visualize your data using Qlucore Omics Explorer. Qlucore is a...

Introduction to kmeans++ clustering

Introduction

Qlucore Omics Explorer, a fast and easy to use bioinformatics analysis software. This video introduces kmeans++ clustering and silhouette plot...

Introduction to Templates

Introduction

Qlucore Omics Explorer includes a powerful functionality called Templates. These Templates are very powerful and easy to use. With very few key clicks, you...

Introduction to t-SNE plot

Introduction

Short introduction showing how Qlucore Omics Explorer provides easy to use t-SNE plots and the tools you need for single Cell analysis. The t-SNE plot is...

Introduction to the Venn diagram plot and the Set tool

Introduction

Introduction to the Venn diagram in Qlucore Omics Explorer as an excellent tool to visualize overlap and interaction between lists. It is easy to set up...

Explore and find patterns in your data

Introduction

Qlucore includes powerful methods to quickly explore large data sets. In this video we demonstrate in Qlucore Omics Explorer how the fast generation of PCA...

Heatmaps for instant visualization

Introduction

Short introduction to Heatmaps. Qlucore Omics Explorer provides super-fast and easy ways to generate heatmaps and configure them to your liking. See how...

t-test and fold change and finding interesting variables

Introduction

Short introduction to how you can find significant variables In Qlucore Omics Explorer using the inbuilt powerful statistical methods - with just a few...

How do I keep track of my analysis?

Webinar

Keeping track of analysis. We often get the question “How do I best keep track of my analysis?” In this webinar we will demonstrate the tools that are...

What is the dimension of a data set?

Webinar

We will describe what the dimension of a data set is and how to know if the first 3 dimensions of the PCA plot is enough to capture the complexity of the...

Single cell RNA-seq

Webinar

Qlucore Omics Explorer includes a set of features directed specifically towards single-cell RNA-seq analysis. These features are t-SNE plots, better...

Focus Next-Generation Sequencing

Webinar

Qlucore Omics Explorer offers a set of NGS focused tools, centered around the Genome Browser. This webinar will show the Genome Browser, how it is used...

Intro New Templates in Omics Explorer 3.5. PART 2 of 2

Webinar

Templates is a new feature set added in Qlucore Omics Explorer 3.5 which allow you to create your own scripted workflows for the software. This webinar...

Introduction New Templates 3.5 - PART 1 of 2

Webinar

Templates is a new feature set added in Qlucore Omics Explorer 3.5 which allows you to create your own scripted work-flows for the software. This webinar...

Specific functionality in Qlucore Omics Explorer

Webinar

In this webinar we are highlighting specific and useful functions such as t-sne plots, variable pre-filtering and the annotation wizard.

Maximize the Impact of Visualization-driven Omics Data Analysis

Webinar

The webinar illustrates visualization-driven data analysis with a live software demonstration, Qlucore Omics Explorer, and share insights driven from in...

Data-driven exploration of public transcriptomic studies

Webinar

Qlucore Omics Explorer and Genevestigator are two complementary tools/services which when used together provide the end user with increased value and...

Meta-analysis and statistics of public and proprietary gene expression data

Webinar

Qlucore Omics Explorer and Genevestigator are two complementary tools/services, which when used together provides the end user with increased value and...

How to use the R interface

Webinar

A webinar on how to use the R interface in Qlucore Omics Explorer. Qlucore supplies pre-defined scripted statistical tests like Welch, Mann-Whitney...

Projection Score in Qlucore Omics Explorer

Webinar

Learn how to use the Qlucore tool Projection Score in data exploration. See also White Paper - Projection Score Projection Score - Hypotheses generation...

Add annotations to a data set

Video Tutorial

This tutorials shows how to import variable and sample annotations to a data set from an annotation file. Annotations are necessary to e.g. create sample...

Identify discriminating variables

Video Tutorial

This tutorial shows how to use Qlucore Omics Explorer to identify discriminating variables (i.e. differential expressed genes, proteins, metabolites etc)...