References
Qlucore Omics Explorer has been used in
Julia Richter, Ole Ammerpohl, Jose I Martin-Subero, Manuel Montesinos-Rongen, Marina Bibikova, Eliza Wickham-Garcia, Otmar D Wiestler, Martina Deckert and Reiner Siebert. Array-based DNA methylation profiling of primary lymphomas of the central nervous system. BMC Cancer 2009, 9:455.
Malin Lindstedt, Inge Nelissen, Sue Gibbs, Carl Borrebaeck. 2010. Mimicking the immunoregulatory properties of primary dendritic cells in vitro - A rational approach to design a test system. Toxicology Reviews. In press.
Mark J Alston , John Seers , Jay CD Hinton and Sacha Lucchini. BABAR: an R package to simplify the normalisation of common reference design microarray-based transcriptomic datasets. BMC Bioinformatics 2010, 11:73
Charlotte Soneson, Henrik Lilljebjörn, Thoas Fioretos, Magnus Fontes.
Multivariate analysis of the relationship between SNP copy number and gene expression in leukemia - Presented at Statistical advances in Genome-scale Data Analysis - Workshop ETH, Ascona 2009
Erik Alexandersson, Jonas Å.H. Danielson, Johan Råde, Vamsi K. Moparthi, Magnus Fontes, Per Kjellbom and Urban Johanson. Transcriptional regulation of aquaporins in accessions of Arabidopsis in response to drought stress, The Plant Journal 2009.
Davidsson Josef; Lilljebjorn Henrik; Andersson Anna; Veerla Srinivas; Heldrup Jesper; Behrendtz Mikael; Fioretos Thoas; Johansson Bertil. The DNA methylome of pediatric acute lymphoblastic leukemia. Human Molecular Genetics 2009
Early versions of Gene Expression Explorer have been used in the following references:
Andersson A, Olofsson T, Lindgren D, Nilsson B, Ritz C, Edén P, Lassen C, Råde J, Fontes M, Mörse H, Heldrup J, Behrendtz M, Mitelman F, Höglund M, Johansson B, Fioretos T. 2005. Molecular signatures in childhood acute leukemia and their correlations to expression patterns in normal hematopoietic subpopulations. Proc Natl Acad Sci USA 102:19069-19074.
Andersson A, Ritz C, Lindgren D, Edén P, Lassen C, Heldrup J, Olofsson T, Råde J, Fontes M, Porwit-McDonald A, Behrendtz M, Höglund M, Johansson B, Fioretos T. 2007. Microarray-based classification of a consecutive series of 121 childhood acute leukemias: prediction of leukemic and genetic subtype as well as of minimal residual disease status. Leukemia 21:1198-1203.
Workshops
Sylvestre Burgos, Manh Hong Duong, Laura Friis Frølich, Daniel Høyer Iversen, Bogna Pawlowska, Matthias Voigt, Mikalai Zhudro. How to enhance the exploratory power of Qlucore Omics Explorer?. The 23rd ECMI Modelling Week, European Student Workshop on Mathematical Modelling in Industry and Commerce Wroclaw University of Technology, Poland, August 23-30, 2009. Report.